#SentieonCommandLine: /opt/sentieon/sentieon-genomics-202308.03/libexec/driver -t 2 -r Sequence/genome.fa -i ResolveOMEv2.0-384-DNA-QC-B4.bam --interval wgs_intervals.bed --algo AlignmentStat ResolveOMEv2.0-384-DNA-QC-B4.dedup.alignmentstat_sentieonmetrics.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER
FIRST_OF_PAIR	839529	839529	1.000000	0	838376	0.998627	40566480	735697	35755946	35131153	0.000000	0.003451	0.002782	0.000270	49.767518	836581	0.997859	0	0.501836	0.085055	0.000043
SECOND_OF_PAIR	839572	839572	1.000000	0	837777	0.997862	40590714	734494	35748976	35035780	0.000000	0.003822	0.003184	0.000276	49.766836	836624	0.998624	0	0.499590	0.085127	0.000000
PAIR	1679101	1679101	1.000000	0	1676153	0.998244	81157194	1470191	71504922	70166933	0.000000	0.003637	0.002983	0.000273	49.767177	1673205	0.998241	0	0.500713	0.085091	0.000021